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Molmed / checkQC

CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria
http://checkqc.readthedocs.io/
GNU General Public License v3.0
25 stars 16 forks source link

WIP: Adding support for NextSeq #69

Closed johandahlberg closed 2 months ago

johandahlberg commented 6 years ago

I've started working on added NextSeq support as in #65, still needs test, qc criterias etc, but this is at least a start.

codecov[bot] commented 6 years ago

Codecov Report

Merging #69 into master will increase coverage by 1%. The diff coverage is 100%.

Impacted file tree graph

@@         Coverage Diff          @@
##           master   #69   +/-   ##
====================================
+ Coverage      92%   92%   +1%     
====================================
  Files          19    19           
  Lines         701   726   +25     
====================================
+ Hits          638   662   +24     
- Misses         63    64    +1
Impacted Files Coverage Δ
checkQC/run_type_recognizer.py 93% <100%> (+1%) :arrow_up:
checkQC/config.py 90% <0%> (-1%) :arrow_down:
checkQC/exceptions.py 100% <0%> (ø)
checkQC/app.py 88% <0%> (+1%) :arrow_up:
checkQC/web_app.py 80% <0%> (+5%) :arrow_up:

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