Molmed / checkQC

CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria
http://checkqc.readthedocs.io/
GNU General Public License v3.0
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CheckQC will ignore white-listed indexes #83

Closed johandahlberg closed 5 years ago

johandahlberg commented 5 years ago

This makes CheckQC ignore any index that is listed in white_listed_indexes, in the configuration. These can be specified as regular expressions, so it should be fairly flexible how you to specify them.

Which indexes would you like to have as default in the whitelist, @MatildaAslin and @sarek928?

codecov[bot] commented 5 years ago

Codecov Report

Merging #83 into master will increase coverage by 1%. The diff coverage is 94%.

Impacted file tree graph

@@         Coverage Diff          @@
##           master   #83   +/-   ##
====================================
+ Coverage      92%   92%   +1%     
====================================
  Files          22    22           
  Lines         970   983   +13     
====================================
+ Hits          885   897   +12     
- Misses         85    86    +1
Impacted Files Coverage Δ
checkQC/handlers/unidentified_index_handler.py 93% <94%> (ø) :arrow_down:

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matrulda commented 5 years ago

Great work!