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MOLNs: a cloud appliance for systems biology applications
http://molns.github.io/molns
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Add GillesPy API #34

Closed ahellander closed 8 years ago

ahellander commented 9 years ago

And provide similar abstractions for parallel ensembles and parameter sweeps as for pyurdme.

ahellander commented 8 years ago

I think this is complete?

briandrawert commented 8 years ago

I would like GillesPy installed by default. I don't think that is the case at the moment.

ahellander commented 8 years ago

I know i have that in a branch, I will find it and add it.

Skickat från min Samsung Mobil.

-------- Originalmeddelande -------- Från: Brian Drawert Datum:09-11-2015 17:56 (GMT+01:00) Till: Molns/molns Kopia: Andreas Hellander Rubrik: Re: [molns] Add GillesPy API (#34)

I would like GillesPy installed by default. I don't think that is the case at the moment.

— Reply to this email directly or view it on GitHubhttps://github.com/Molns/molns/issues/34#issuecomment-139583616.

briandrawert commented 8 years ago

This is in the stochss_integration branch (I think), so the problem is that it requires a install (and initial run) of StochSS to get both the stochastic and deterministic solvers working.

On Sep 11, 2015, at 10:22 AM, Andreas Hellander notifications@github.com wrote:

I know i have that in a branch, I will find it and add it.

Skickat från min Samsung Mobil.

-------- Originalmeddelande -------- Från: Brian Drawert Datum:09-11-2015 17:56 (GMT+01:00) Till: Molns/molns Kopia: Andreas Hellander Rubrik: Re: [molns] Add GillesPy API (#34)

I would like GillesPy installed by default. I don't think that is the case at the moment.

— Reply to this email directly or view it on GitHubhttps://github.com/Molns/molns/issues/34#issuecomment-139583616. — Reply to this email directly or view it on GitHub https://github.com/Molns/molns/issues/34#issuecomment-139605944.

ahellander commented 8 years ago

I have a branch that only installs stochkit and gillespy. I dont want to run the whole stochss install unless the objective is to run stochss.

Skickat från min Samsung Mobil.

-------- Originalmeddelande -------- Från: Brian Drawert Datum:09-11-2015 19:24 (GMT+01:00) Till: Molns/molns Kopia: Andreas Hellander Rubrik: Re: [molns] Add GillesPy API (#34)

This is in the stochss_integration branch (I think), so the problem is that it requires a install (and initial run) of StochSS to get both the stochastic and deterministic solvers working.

On Sep 11, 2015, at 10:22 AM, Andreas Hellander notifications@github.com wrote:

I know i have that in a branch, I will find it and add it.

Skickat från min Samsung Mobil.

-------- Originalmeddelande -------- Från: Brian Drawert Datum:09-11-2015 17:56 (GMT+01:00) Till: Molns/molns Kopia: Andreas Hellander Rubrik: Re: [molns] Add GillesPy API (#34)

I would like GillesPy installed by default. I don't think that is the case at the moment.

— Reply to this email directly or view it on GitHubhttps://github.com/Molns/molns/issues/34#issuecomment-139583616. — Reply to this email directly or view it on GitHub https://github.com/Molns/molns/issues/34#issuecomment-139605944.

— Reply to this email directly or view it on GitHubhttps://github.com/Molns/molns/issues/34#issuecomment-139606414.

briandrawert commented 8 years ago

Excellent, can you send me a PR from that branch so I can test?

On Sep 11, 2015, at 10:28 AM, Andreas Hellander notifications@github.com wrote:

I have a branch that only installs stochkit and gillespy. I dont want to run the whole stochss install unless the objective is to run stochss.

Skickat från min Samsung Mobil.

-------- Originalmeddelande -------- Från: Brian Drawert Datum:09-11-2015 19:24 (GMT+01:00) Till: Molns/molns Kopia: Andreas Hellander Rubrik: Re: [molns] Add GillesPy API (#34)

This is in the stochss_integration branch (I think), so the problem is that it requires a install (and initial run) of StochSS to get both the stochastic and deterministic solvers working.

On Sep 11, 2015, at 10:22 AM, Andreas Hellander notifications@github.com wrote:

I know i have that in a branch, I will find it and add it.

Skickat från min Samsung Mobil.

-------- Originalmeddelande -------- Från: Brian Drawert Datum:09-11-2015 17:56 (GMT+01:00) Till: Molns/molns Kopia: Andreas Hellander Rubrik: Re: [molns] Add GillesPy API (#34)

I would like GillesPy installed by default. I don't think that is the case at the moment.

— Reply to this email directly or view it on GitHubhttps://github.com/Molns/molns/issues/34#issuecomment-139583616. — Reply to this email directly or view it on GitHub https://github.com/Molns/molns/issues/34#issuecomment-139605944.

— Reply to this email directly or view it on GitHubhttps://github.com/Molns/molns/issues/34#issuecomment-139606414. — Reply to this email directly or view it on GitHub https://github.com/Molns/molns/issues/34#issuecomment-139607120.

briandrawert commented 8 years ago

This was fixed in https://github.com/Molns/molns/pull/45