Docker dependency install error

[neoformit]

Docker fails to install dependencies when building from Dockerfile. Container runs but request to https://localhost:3838/LFQ-Analyst times out.

OS: Linux Ubuntu 20.04.3 LTS Full output: docker-build.out.txt

download.file() fails with unused argument (checkBuilt = FALSE):

Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) :
  package ‘BiocVersion’ is not available (for R version 3.4.3)
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘lambda.r’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘futile.options’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘zlibbioc’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘futile.logger’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘snow’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘affyio’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘doParallel’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘foreach’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘iterators’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘mvtnorm’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘mzR’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘BiocParallel’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘ProtGenerics’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘preprocessCore’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘affy’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘impute’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘pcaMethods’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘MALDIquant’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘mzID’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘shape’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘tmvtnorm’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘XVector’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘matrixStats’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘RCurl’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘GenomeInfoDbData’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘rjson’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘Biobase’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘MSnbase’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘vsn’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘fdrtool’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘ggrepel’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘circlize’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘imputeLCMD’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘GenomicRanges’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘DelayedArray’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘BiocGenerics’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘S4Vectors’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘IRanges’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘GenomeInfoDb’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘GetoptLong’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘GlobalOptions’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘DEP’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘SummarizedExperiment’ failed
Error in download.file(url, destfile, method, mode = "wb", ...) :
  unused argument (checkBuilt = FALSE)
In addition: Warning message:
In .inet_warning(msg) : download of package ‘limma’ failed
Old packages: 'MASS', 'mgcv', 'nlme', 'rpart'
Warning message:
In .inet_warning(msg) : download of package ‘ComplexHeatmap’ failed