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MonashBioinformaticsPlatform / RNAsik-pipe

RNAsik - more than just a pipeline
https://monashbioinformaticsplatform.github.io/RNAsik-pipe/
Apache License 2.0
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Output a citation list of tools used #56

Open pansapiens opened 4 years ago

pansapiens commented 4 years ago

RNAsik should output a file with proper citations for all dependent tools used in the run (eg STAR, picard, samtools, featureCounts, qualimap, others), along with the citation for RNAsik itself. This will simplify correct citation for users. Ideally the list of versions use (eg content in sikRun/logs) would also be consolidated into this one file.

serine commented 3 years ago

@pansapiens great idea, I was thinking along the same lines. I've committed BibTex file, which is common citation format into the repo, this commit 32d2646. Most citation management tool should be able to incorporate BibTex easily and use that for citations. BibTex also plays nice with Rmarkdown.

serine commented 3 years ago

Also @pansapiens not sure if you have seen that, but the docs always had a citation information here https://monashbioinformaticsplatform.github.io/RNAsik-pipe/#how-to-cite