Closed Hailey-Z closed 1 year ago
hide for now, will fix it later. 287dfe5
The first reason of this error is because we don't have Combined Total Peptides
in the FragPipe output right now.
Another reason, as described in #20, is that we currently use path as colnames. Additionally, we don't have replicate in the example DIA dataset.
Fixed in 102195a. @Hailey-Z Can you check again if it works now?
Hi @hsiaoyi0504, modified it to hide the check box on DIA absence/presence page, as it seems the DIA dataset doesn't have Combined Total Peptides
column, please check it here: db8eb20407cb16efb15c81b9136b2a776dd247db.
Happy if you would like to polish this phrase https://github.com/MonashProteomics/FragPipe-Analyst/blob/db8eb20407cb16efb15c81b9136b2a776dd247db/ui.R#L471
@Hailey-Z It looks ok to me, but probably you should include the corresponding shinyjs::show
part for LFQ, or it would become a bug if a user submits a DIA data first and then uploads another LFQ data later.
@hsiaoyi0504 Thanks Leo, added in this commit 03e6ef5973ad082e1d98afe044fde46330f4aab3.