Update column names used for DIA

[hsiaoyi0504]

Currently, the internal data structure still uses path as column name, but we should update it to [condition]_[replicate] to have better user experience overall. However, it's a big change and might break lots of things.

[hsiaoyi0504]

• [ ] Heatmap
• [ ] sample correlation
• [ ] protein number
• [ ] normalization
• [ ] missing values - Heatmap

[hsiaoyi0504]

Fixed in635032d.