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MonashProteomics / FragPipe-Analyst

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Enrichment analysis doesn't separate up and down regulated parts #23

Closed hsiaoyi0504 closed 1 year ago

hsiaoyi0504 commented 1 year ago

ccRCC 3-plex example shows upregulation of oxidative phosphorylation

hsiaoyi0504 commented 1 year ago

the significant tag is added by add_rejections function in DEP https://github.com/arnesmits/DEP/blob/b425d8d0db67b15df4b8bcf87729ef0bf5800256/R/functions.R#L1032

hsiaoyi0504 commented 1 year ago

Finished in 4448d45