Closed hsiaoyi0504 closed 1 year ago
Compared to corresponding TMT data, DIA data relies on fp.manifest rather than a combined_annotation.txt. That means we don't have a condition column. Instead, we have a column called experiment.
Internal | TMT | DIA |
---|---|---|
replicate | replicate | bioreplicate |
condition | condition | part of experiment cloumn (like Tumor in Tumor_1 ) |
Related to #15 and #20.
Currently, the manifest of the DIA example (from ccRCC discovery cohort) is like this:
But it should be
Therefore, the current DIA code needs to be changed.