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MonashProteomics / FragPipe-Analyst

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How to analyse phosphoproteome data acquired using DDA with reference to the proteome data acquired using DIA? #90

Closed YeelonYeoh closed 5 months ago

YeelonYeoh commented 6 months ago

Hi, I want to analyse phosphoproteome data acquired using DDA with reference to the proteome data acquired using DIA. May I get advices for doing so? Perhaps you might refer me to the user's manuals or papers that describe the ways to do so.

hsiaoyi0504 commented 6 months ago

Have you resolved #88? It's uncommon to acquire them in differently. I guess you could do analysis independently without normalization across them. Anyway, it seems not be the topic supported by current FragPipe-Analyst.

YeelonYeoh commented 6 months ago

I have resolved https://github.com/MonashProteomics/FragPipe-Analyst/issues/88