Unable to generate results when analyzing DIA precursor file

MonashProteomics / FragPipe-Analyst

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Unable to generate results when analyzing DIA precursor file #93

Closed YeelonYeoh closed 3 months ago

YeelonYeoh commented 4 months ago

I tried to generate DE results from DIA precursor file but ended up waiting for so long. May I get advice to solve this issue?

hsiaoyi0504 commented 4 months ago

Hi @YeelonYeoh I never had this issue. Could you send me your files and let me take a look? yihsiao@umich.edu If it's just taking long time rather than showing an error, I am not sure how much I can help.

YeelonYeoh commented 4 months ago

Here, I have attached the protein group file, the precursor file and the annotation file for trial. I want analyse both files together (meaning insert the protein file first and then the precursor file before click 'run') to see how does the analysis results compare to just using the protein group file alone as input for the run. Trial_DIA_FragPipe-Analyst.zip

hsiaoyi0504 commented 4 months ago

@YeelonYeoh I am sorry, but that's not FragPipe-Analyst has supported. May I know what's the idea of using both here?