any idea why `install.packages("Rcpp")` fails on stones15?

[ajdamico]

trying to play with the CE bug to see if i can fix things, but i can't even get through packages.R? perhaps the server's just jammed up at the moment? here's what happens in directory /scratch/damico/CE. thanks

[damico@stones15 CE]$ R

R version 3.1.1 (2014-07-10) -- "Sock it to Me"
Copyright (C) 2014 The R Foundation for Statistical Computing
Platform: x86_64-redhat-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

>
> install.packages("Rcpp")

[snip]

trying URL 'http://mirror.fcaglp.unlp.edu.ar/CRAN/src/contrib/Rcpp_0.12.6.tar.gz'
Content type 'application/x-gzip' length 2415707 bytes (2.3 Mb)
opened URL
==================================================
downloaded 2.3 Mb

* installing *source* package ‘Rcpp’ ...
** package ‘Rcpp’ successfully unpacked and MD5 sums checked
** libs
g++ -m64 -I/usr/include/R -DNDEBUG -I../inst/include/ -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m64 -mtune=generic  -c Date.cpp -o Date.o
In file included from ../inst/include/RcppCommon.h:122:0,
                 from ../inst/include/Rcpp.h:27,
                 from Date.cpp:31:
../inst/include/Rcpp/exceptions.h:267:23: error: expected initializer before ‘stop’
     inline void NORET stop(const std::string& message) {
                       ^
../inst/include/Rcpp/exceptions.h:272:23: error: expected initializer before ‘stop’
     inline void NORET stop(const char* fmt, const T1& arg1) {
                       ^
../inst/include/Rcpp/exceptions.h:277:23: error: expected initializer before ‘stop’
     inline void NORET stop(const char* fmt, const T1& arg1, const T2& arg2) {
                       ^
../inst/include/Rcpp/exceptions.h:282:23: error: expected initializer before ‘stop’
     inline void NORET stop(const char* fmt, const T1& arg1, const T2& arg2, const T3& arg3) {
                       ^
../inst/include/Rcpp/exceptions.h:287:23: error: expected initializer before ‘stop’
     inline void NORET stop(const char* fmt, const T1& arg1, const T2& arg2, const T3& arg3, const T4& arg4) {
                       ^
../inst/include/Rcpp/exceptions.h:292:23: error: expected initializer before ‘stop’
     inline void NORET stop(const char* fmt, const T1& arg1, const T2& arg2, const T3& arg3, const T4& arg4, const T5& arg5) {
                       ^
../inst/include/Rcpp/exceptions.h:297:23: error: expected initializer before ‘stop’
     inline void NORET stop(const char* fmt, const T1& arg1, const T2& arg2, const T3& arg3, const T4& arg4, const T5& arg5, const T6& arg6) {
                       ^
../inst/include/Rcpp/exceptions.h:302:23: error: expected initializer before ‘stop’
     inline void NORET stop(const char* fmt, const T1& arg1, const T2& arg2, const T3& arg3, const T4& arg4, const T5& arg5, const T6& arg6, const T7& arg7) {
                       ^
../inst/include/Rcpp/exceptions.h:307:23: error: expected initializer before ‘stop’
     inline void NORET stop(const char* fmt, const T1& arg1, const T2& arg2, const T3& arg3, const T4& arg4, const T5& arg5, const T6& arg6, const T7& arg7, const T8& arg8) {
                       ^
../inst/include/Rcpp/exceptions.h:312:23: error: expected initializer before ‘stop’
     inline void NORET stop(const char* fmt, const T1& arg1, const T2& arg2, const T3& arg3, const T4& arg4, const T5& arg5, const T6& arg6, const T7& arg7, const T8& arg8, const T9& arg9) {
                       ^
../inst/include/Rcpp/exceptions.h:317:23: error: expected initializer before ‘stop’
     inline void NORET stop(const char* fmt, const T1& arg1, const T2& arg2, const T3& arg3, const T4& arg4, const T5& arg5, const T6& arg6, const T7& arg7, const T8& arg8, const T9& arg9, const T10& arg10) {
                       ^
In file included from ../inst/include/Rcpp/Vector.h:56:0,
                 from ../inst/include/Rcpp.h:38,
                 from Date.cpp:31:
../inst/include/Rcpp/vector/DimNameProxy.h: In member function ‘Rcpp::internal::DimNameProxy& Rcpp::internal::DimNameProxy::assign(SEXP)’:
../inst/include/Rcpp/vector/DimNameProxy.h:43:121: error: too many arguments to function ‘void Rcpp::stop(const string&)’
                     stop("dimension extent is '%d' while length of names is '%d'", INTEGER(dims)[dim_], Rf_length(other));
                                                                                                                         ^
In file included from ../inst/include/RcppCommon.h:70:0,
                 from ../inst/include/Rcpp.h:27,
                 from Date.cpp:31:
../inst/include/Rcpp/utils/tinyformat.h:127:10: note: declared here
     void stop(const std::string& message);
          ^
In file included from ../inst/include/Rcpp.h:47:0,
                 from Date.cpp:31:
../inst/include/Rcpp/Function.h: In constructor ‘Rcpp::Function_Impl<StoragePolicy>::Function_Impl(const string&, const string&)’:
../inst/include/Rcpp/Function.h:72:63: error: too many arguments to function ‘void Rcpp::stop(const string&)’
                 stop("there is no namespace called \"%s\"", ns);
                                                               ^
In file included from ../inst/include/RcppCommon.h:70:0,
                 from ../inst/include/Rcpp.h:27,
                 from Date.cpp:31:
../inst/include/Rcpp/utils/tinyformat.h:127:10: note: declared here
     void stop(const std::string& message);
          ^
make: *** [Date.o] Error 1
ERROR: compilation failed for package ‘Rcpp’
* removing ‘/local/damico/R/x86_64-redhat-linux-gnu-library/3.1/Rcpp’

The downloaded source packages are in
        ‘/tmp/RtmpXSSjV5/downloaded_packages’
Warning message:
In install.packages("Rcpp") :
  installation of package ‘Rcpp’ had non-zero exit status
>

[hannes]

that's on the Rcpp guys...

[hannes]

also why are you using a mirror from argentina?

[ajdamico]

i tried a bunch, none work. i'll file a bug with them, thanks

On Tue, Jul 26, 2016 at 3:28 AM, Hannes Mühleisen notifications@github.com wrote:

also why are you using a mirror from argentina?

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/MonetDB/eanthony/issues/70#issuecomment-235184512, or mute the thread https://github.com/notifications/unsubscribe-auth/AANO52yivNpxYBCnI2bSIBeX9bcGLh89ks5qZbcbgaJpZM4JU00D .

[hannes]

some version info

uname -a
Linux stones15.scilens.private 3.12.10-300.fc20.x86_64 #1 SMP Thu Feb 6 22:11:48 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux

gcc -v
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.2/lto-wrapper
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-isl=/builddir/build/BUILD/gcc-4.8.2-20131212/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.2-20131212/obj-x86_64-redhat-linux/cloog-install --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux
Thread model: posix
gcc version 4.8.2 20131212 (Red Hat 4.8.2-7) (GCC) 

[ajdamico]

https://github.com/RcppCore/Rcpp/issues/519