tinyRNA provides an all-in-one solution for precision analysis of sRNA-seq data. At the core of tinyRNA is a highly flexible counting utility, tiny-count, that allows for hierarchical assignment of reads to features based on positional information, extent of feature overlap, 5’ nucleotide, length, and strandedness.
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Counter: de-collapse SAM files for use with IGV #150
Collapsed SAM files make alignment and counting more efficient, but they aren't useful when opened in IGV. A command line option will be added to Counter and the Run Config for de-collapsing SAM files on-the-fly during normal counting, and an option to only only de-collapse the SAM files via tiny-count
Collapsed SAM files make alignment and counting more efficient, but they aren't useful when opened in IGV. A command line option will be added to Counter and the Run Config for de-collapsing SAM files on-the-fly during normal counting, and an option to only only de-collapse the SAM files via
tiny-count