MontgomeryLab / tinyRNA

tinyRNA provides an all-in-one solution for precision analysis of sRNA-seq data. At the core of tinyRNA is a highly flexible counting utility, tiny-count, that allows for hierarchical assignment of reads to features based on positional information, extent of feature overlap, 5’ nucleotide, length, and strandedness.
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Counter: expand options for strict interval matching #164

Closed AlexTate closed 2 years ago

AlexTate commented 2 years ago

The following are valid options for the Match column of the Features Sheet:

The following options should be added to this selector:

AlexTate commented 2 years ago

The above description could lead to some confusion. The strand dependency of the 5' and 3' anchored selectors is not a consideration when processing GFF and SAM data since all positions are defined using the same coordinate system and origin regardless of strand (that is, the start position in these records does not imply 5' position)