tinyRNA provides an all-in-one solution for precision analysis of sRNA-seq data. At the core of tinyRNA is a highly flexible counting utility, tiny-count, that allows for hierarchical assignment of reads to features based on positional information, extent of feature overlap, 5’ nucleotide, length, and strandedness.
We are preparing to release version 1.0. There are some detail changes that need to be made which don't warrant a separate issue, so they will be listed here. This issue will remain open and additional items may be added until the release is made.
[x] Change Readme.md tagline to "tinyRNA: precision analysis of small RNA high-throughput sequencing data"
[x] Update the sample data in the START_HERE directory with a generated dataset
[x] Change the Feature Sheet Match column to Overlap
[x] Change error handling in Plotter to match that in Counter (let the user know they can run tiny replot rather than starting over at the beginning)
[x] Change Collapser and Counter help strings to list required arguments before optional arguments, as Plotter does
We are preparing to release version 1.0. There are some detail changes that need to be made which don't warrant a separate issue, so they will be listed here. This issue will remain open and additional items may be added until the release is made.
Matchcolumn toOverlaptiny replotrather than starting over at the beginning)