tinyRNA provides an all-in-one solution for precision analysis of sRNA-seq data. At the core of tinyRNA is a highly flexible counting utility, tiny-count, that allows for hierarchical assignment of reads to features based on positional information, extent of feature overlap, 5’ nucleotide, length, and strandedness.
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tiny-deseq.r: formatting fixes for pvalue/padj precision #232
The pvalue and padj columns are now formatted according to the host's default preferences for significant figures and scientific notation threshold. Empty cells are also formatted with "NA".
tiny-deseq.r has also been refactored to refer to counts table columns by name rather than by range. In addition to making the code more readable, this will make future changes to metadata and multi-index columns much easier.
taimontgomery
commented
2 years ago
The pvalue and padj columns are now formatted according to the host's default preferences for significant figures and scientific notation threshold. Empty cells are also formatted with "NA".
tiny-deseq.r has also been refactored to refer to counts table columns by name rather than by range. In addition to making the code more readable, this will make future changes to metadata and multi-index columns much easier.
Closes #230