tinyRNA provides an all-in-one solution for precision analysis of sRNA-seq data. At the core of tinyRNA is a highly flexible counting utility, tiny-count, that allows for hierarchical assignment of reads to features based on positional information, extent of feature overlap, 5’ nucleotide, length, and strandedness.
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Pipeline: add support for large bowtie indexes #237
The pipeline is currently configured to only handle .ebwt bowtie indexes. Support for .ebwtl large indexes will be added.