tinyRNA provides an all-in-one solution for precision analysis of sRNA-seq data. At the core of tinyRNA is a highly flexible counting utility, tiny-count, that allows for hierarchical assignment of reads to features based on positional information, extent of feature overlap, 5’ nucleotide, length, and strandedness.
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GFFValidator: allow validation with gzip compressed reference genomes #250
Currently, GFFValidator will produce a warning indicating that GFF chromosomes couldn't be validated if the reference genome file is gzip compressed. This is simply a warning and execution continues without error, but it would be convenient to extend gzip support for this validation route as genomes are often compressed.
Currently, GFFValidator will produce a warning indicating that GFF chromosomes couldn't be validated if the reference genome file is gzip compressed. This is simply a warning and execution continues without error, but it would be convenient to extend gzip support for this validation route as genomes are often compressed.