tinyRNA provides an all-in-one solution for precision analysis of sRNA-seq data. At the core of tinyRNA is a highly flexible counting utility, tiny-count, that allows for hierarchical assignment of reads to features based on positional information, extent of feature overlap, 5’ nucleotide, length, and strandedness.
[x] Bugfix: non-differentially expressed features are misrepresented in scatter_dge_class plots under certain conditions
[x] Bugfix: the size of an empty StepVector differs between the HTSeq StepVector and our Cython StepVector, meaning that tiny-count runs aren't handled properly when there are no Stage 1 matches (this should be an error)
[x] Bugfix: changes to the Paths File between recount/replot runs are not reflected
[x] Bugfix: cwltool issues a notice of duplicate parameter names in tiny-plot.cwl
[x] Add a version parameter to the Run Config so that processed run configs are automatically updated with the tinyRNA version that was used
[x] Add Matplotlib documentation link in the .mplstyle template stylesheet
[x] Add the keyword "any" to the list of wildcard keywords permitted in selection rules
[x] Add a diagram that demonstrates Stage 1-3 selection to the documentation
[x] Add documentation notes about Run Directory files that can be safely removed to reduce storage usage
[x] Update version number in setup.py
[x] Update TUTORIAL.md with corrected line number references for paths.yml