Version 1.2 prep: allow changes in Paths File between resume runs

MontgomeryLab / tinyRNA

tinyRNA provides an all-in-one solution for precision analysis of sRNA-seq data. At the core of tinyRNA is a highly flexible counting utility, tiny-count, that allows for hierarchical assignment of reads to features based on positional information, extent of feature overlap, 5’ nucleotide, length, and strandedness.

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Version 1.2 prep: allow changes in Paths File between resume runs #254

Closed AlexTate closed 1 year ago

AlexTate commented 1 year ago

This PR allows for certain keys in the Paths File to be changed between resume runs. This addresses a bug where changes to the parameters in the Paths Sheet aren't integrated into the processed Run Config when executing resume runs. This PR also addresses a notice (not warning or error) issued by cwltool regarding similar parameter names in tiny-plot.cwl

taimontgomery commented 1 year ago

Tested tiny replot successfully on Lib303 and ram1 datasets and tiny recount on ram1 data.