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MontgomeryLab / tinyRNA

tinyRNA provides an all-in-one solution for precision analysis of sRNA-seq data. At the core of tinyRNA is a highly flexible counting utility, tiny-count, that allows for hierarchical assignment of reads to features based on positional information, extent of feature overlap, 5’ nucleotide, length, and strandedness.
GNU General Public License v3.0
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Project: tiny-count standalone installation option via bioconda #257

Closed AlexTate closed 1 year ago

AlexTate commented 1 year ago

tiny-count can now be installed via bioconda. This installation option carries fewer dependencies and does not require a dedicated tinyRNA environment. Installation instructions have been updated in README.md.

Currently the recipe places strict version requirements on its dependencies since these are the only versions we have tested. We have discussed enhancing our testing protocol with tox to test over a wider range of versions, which should allow us to relax some of these requirements, but we'll need to reconcile the diverging identities of tinyRNA and tiny-count first.

Closes #216

taimontgomery commented 1 year ago

Tested successfully installation of tiny-count via Conda. Tested successfully counts for ram1 data using sam files from full pipeline run.