MontgomeryLab / tinyRNA

tinyRNA provides an all-in-one solution for precision analysis of sRNA-seq data. At the core of tinyRNA is a highly flexible counting utility, tiny-count, that allows for hierarchical assignment of reads to features based on positional information, extent of feature overlap, 5’ nucleotide, length, and strandedness.
GNU General Public License v3.0
1 stars 1 forks source link

tiny-plot: user-defined view limits for DGE scatter plots, and other consistency improvements #273

Closed AlexTate closed 1 year ago

AlexTate commented 1 year ago

This PR adds options for user-specified min and/or max view limits for DGE scatter plots, which are specified as log2 count values and can be whole or fractional numbers. It also includes minor changes to output filenames from tiny-deseq and tiny-plot to be consistent with the "experimental condition vs. control condition" order used in DGE scatter plots. Plot titles and axis labels in bar plots have been updated to have sentence case, to be consistent with the scatter plots.

The following minor bugs have also been addressed:

Closes #271

taimontgomery commented 1 year ago

Tested custom plot limits successfully with Lib303 dataset. File names and plot labels are correct.