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MontgomeryLab / tinyRNA

tinyRNA provides an all-in-one solution for precision analysis of sRNA-seq data. At the core of tinyRNA is a highly flexible counting utility, tiny-count, that allows for hierarchical assignment of reads to features based on positional information, extent of feature overlap, 5’ nucleotide, length, and strandedness.
GNU General Public License v3.0
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CSVReader: ellipsis character replacement, empty rows are skipped #290

Closed AlexTate closed 1 year ago

AlexTate commented 1 year ago

CSVReader now replaces the ellipsis character, which Microsoft Excel autocorrects from three periods, in header lines. The corrected file is written to disk because there isn't a good way to do this on-the-fly.

Rows that are empty/whitespace don't have any useful meaning in our config files, and they cause problems while parsing. These rows are now skipped.

Closes #288

taimontgomery commented 1 year ago

Did not test specific issue this PR addresses.