tinyRNA provides an all-in-one solution for precision analysis of sRNA-seq data. At the core of tinyRNA is a highly flexible counting utility, tiny-count, that allows for hierarchical assignment of reads to features based on positional information, extent of feature overlap, 5’ nucleotide, length, and strandedness.
[x] Update DGE scatter plots to add support for plotting features that have a count of 0 in one condition. Currently these features are omitted from the plot due to the log2 singularity at 0
[x] Remove counter_all_features from the Run Config. This is a deprecated feature.
[x] Remove bowtie's trim5 and trim3 parameters from the Run Config to avoid confusion with tiny-collapse's 5p_trim and 3p_trim
[x] Update documentation diagrams to include the Mismatches column from the Features Sheet
counter_all_features
from the Run Config. This is a deprecated feature.trim5
andtrim3
parameters from the Run Config to avoid confusion with tiny-collapse's5p_trim
and3p_trim
Mismatches
column from the Features Sheet