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MontgomeryLab / tinyRNA

tinyRNA provides an all-in-one solution for precision analysis of sRNA-seq data. At the core of tinyRNA is a highly flexible counting utility, tiny-count, that allows for hierarchical assignment of reads to features based on positional information, extent of feature overlap, 5’ nucleotide, length, and strandedness.
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AlignmentReader and SamplesSheet classes: produce more helpful errors for empty sample files #335

Closed AlexTate closed 5 months ago

AlexTate commented 5 months ago

Closes #334.

In addition to the validation steps described in the issue, this PR also ensures that tiny-count stack traces are written to both the terminal and log file during pipeline runs. Previously these stack traces were only written to the terminal and easily lost when the window was closed.

taimontgomery commented 5 months ago

Tested successfully with simulated data.