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MontrealCorpusTools / Montreal-Forced-Aligner

Command line utility for forced alignment using Kaldi
https://montrealcorpustools.github.io/Montreal-Forced-Aligner/
MIT License
1.3k stars 243 forks source link

[BUG] Deprecation warning with Bio.pairwise2 #527

Closed sidhiadkoli closed 1 year ago

sidhiadkoli commented 1 year ago

Issue

Bio.pairwise2 appears to be deprecated in the latest version v1.8 of biopython.

Warning message:

/home/[USER]/.conda/envs/aligner/lib/python3.10/site-packages/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module.

Reproducing this issue

Install dependencies via conda: conda create -n aligner -c conda-forge montreal-forced-aligner

Desktop:

yanirmr commented 1 year ago

Sams issue in Windows 10

n8young commented 1 year ago

Having the same issue on Mac OS 13.0.1 (22A400). Gets stuck at 11% https://www.dropbox.com/s/sjkkgkcklw95d4h/Untitled.png?dl=0

Ma-Hansen commented 1 year ago

I encountered the same issue today. Is V2.1 already launched or is it about to happen and this should then resolve the issue?