Instance: Explore as a possible instance for PhysiCell Studio

[rheiland]

Cloud Computing Instance Flavor

g3.xl - GPU instance (32 CPUs, 125 GB RAM and A100 GPU)

Description

Julian Pistorius recommended that I explore MorphoCloud as a possible option for a Web-based alternative to our PhysiCell Studio desktop application. Our application simulates multicellular agent based models and will be used in a 5-year NCI-funded project.

ORCID

0000-0002-7440-2905

Email

heiland@iu.edu

[github-actions[bot]]

Instance Name

instance-57

The instance name is derived from the GitHub issue number using the template instance-NNN. The instance may also be located in the exosphere interface using this name.

[github-actions[bot]]

Volume Name

My-Data-57

The volume name is derived from the GitHub issue number using the template My-Data-NNN. The volume may also be located in the exosphere interface using this name.

[github-actions[bot]]

Supported Issue Commands

The commands described below may be added as issue comments. Only one command may be entered per comment.

Command	Description	Who
/shelve	Shelve the instance.	Issue creator, Admin
/unshelve	Unshelve the instance.	Issue creator, Admin
/encode_email	Update issue description obfuscating email.	Issue creator, Admin
/decode_email	Update issue description deobfuscating email.	Issue creator, Admin
/email	Send email to Issue creator with connection URL.	Issue creator, Admin
/create	Create the instance and associated volume.	Admin
/delete_instance	Delete the instance.	Admin
/delete_volume	Delete the volume.	Admin
/delete_all	Delete the instance and volume.	Admin

[github-actions[bot]]

Validation Results

Check	Status
ORCID iD format	✅
Email format	✅

See details at https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11409584609

[muratmaga]

Thank you for your interest. I am not sure how exactly this may work out for you, as we have very specific use (interactive 3D visualization and data processing). In any event, I approved your request. You should shortly receive the access credentials and short usage instructions in your email. Note that this is still somewhat experimental (though fairly stable) so do give us feedback.

Please do check this document, if you haven't done so: https://docs.google.com/document/d/1WRds-QWnDK1MnmEhGUPyBgjE9hitiddcElAPWiAYRg4/edit?tab=t.0#heading=h.b0yi3m7wlfk8

[muratmaga]

/create

[github-actions[bot]]

Instance Creation Progress ⏳

Create IP	Create Volume	Create Instance	Associate IP	Setup Instance	Attach volume	Send Email
✅	✅	✅	✅	⏳

See details at https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11410361931

[github-actions[bot]]

Instance Creation Results ❌

Maximum wait time for instance instance-57 setup to complete exceeded.

See details at https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11410361931

[muratmaga]

/delete_instance

[github-actions[bot]]

Command Results ✅

delete command successfully applied to instance-57 instance.

See details at https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11410720524

[muratmaga]

/create

[github-actions[bot]]

Instance Creation Progress ⏳

Create IP	Create Volume	Create Instance	Associate IP	Setup Instance	Attach volume	Send Email
✅	✅	✅	✅	✅	✅	✅

See details at https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11410729607

[github-actions[bot]]

Instance Creation Results ⚠️

Volume My-Data-57 already exists.

See details at https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11410729607

[jcfr]

To accommodate both possible future delay in jetstream provisioning time and increase provisioning time following the installation of SlicerMorph dependencies during provisioning, I further increased the polling timeout. See https://github.com/MorphoCloud/MorphoCloudInstances/commit/3761333c3657d4141981bf5f8eda971f52cbdfcf

[morphocloud-workflow-app[bot]]

Workflow control-instance-from-workflow.yml triggered by automatic-instance-shelving.yml for command shelve

For details, see https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11413106835_

[github-actions[bot]]

Command shelve issued by control-instance-from-workflow.yml workflow

For details, see https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11413109850_

[github-actions[bot]]

Command Results ✅

shelve command successfully applied to instance-57 instance.

See details at https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11413109850

[rheiland]

/unshelve

[github-actions[bot]]

Command Results ✅

unshelve command successfully applied to instance-57 instance.

See details at https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11441846648

[morphocloud-workflow-app[bot]]

Workflow control-instance-from-workflow.yml triggered by automatic-instance-shelving.yml for command shelve

For details, see https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11446201726_

[github-actions[bot]]

Command shelve issued by control-instance-from-workflow.yml workflow

For details, see https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11446206289_

[github-actions[bot]]

Command Results ✅

shelve command successfully applied to instance-57 instance.

See details at https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11446206289

[rheiland]

/unshelve

[github-actions[bot]]

Command Results ✅

unshelve command successfully applied to instance-57 instance.

See details at https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11447500483

[morphocloud-workflow-app[bot]]

Workflow control-instance-from-workflow.yml triggered by automatic-instance-shelving.yml for command shelve

For details, see https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11450539598_

[github-actions[bot]]

Command shelve issued by control-instance-from-workflow.yml workflow

For details, see https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11450542840_

[github-actions[bot]]

Command Results ✅

shelve command successfully applied to instance-57 instance.

See details at https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11450542840

[rheiland]

/unshelve

[github-actions[bot]]

Command Results ✅

unshelve command successfully applied to instance-57 instance.

See details at https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11451142558

[morphocloud-workflow-app[bot]]

Workflow control-instance-from-workflow.yml triggered by automatic-instance-shelving.yml for command shelve

For details, see https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11453508752_

[github-actions[bot]]

Command shelve issued by control-instance-from-workflow.yml workflow

For details, see https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11453511198_

[github-actions[bot]]

Command Results ✅

shelve command successfully applied to instance-57 instance.

See details at https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11453511198

[rheiland]

/unshelve

[github-actions[bot]]

Command Results ✅

unshelve command successfully applied to instance-57 instance.

See details at https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11458865116

[rheiland]

/shelve

[github-actions[bot]]

Command Results ✅

shelve command successfully applied to instance-57 instance.

See details at https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11459348942

[rheiland]

/unshelve

[github-actions[bot]]

Command Results ✅

unshelve command successfully applied to instance-57 instance.

See details at https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11466317758

[rheiland]

/shelve

[github-actions[bot]]

Command Results ✅

shelve command successfully applied to instance-57 instance.

See details at https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11466670762