Instance: Volume compressed into ROI

[OwenProulx]

Cloud Computing Instance Flavor

g3.xl - GPU instance (32 CPUs, 125 GB RAM and A100 GPU)

Description

I (Owen Proulx) have been having this issue for the past few weeks. When I load reconstruction files into slicer, I get this series of errors: Python 3.9.10 (main, Apr 5 2024, 01:02:26) [MSC v.1938 64 bit (AMD64)] on win32

[Qt] libpng warning: iCCP: profile ‘ICC Profile’: ‘CMYK’: invalid ICC profile color space

[Qt] libpng warning: iCCP: known incorrect sRGB profile

[FD] TIFFReadDirectory: Warning, Unknown field with tag 65280 (0xff00) encountered.

[FD] TIFFReadDirectory: Warning, Unknown field with tag 65281 (0xff01) encountered.

[FD] TIFFReadDirectory: Warning, Unknown field with tag 65280 (0xff00) encountered.

[FD] TIFFReadDirectory: Warning, Unknown field with tag 65281 (0xff01) encountered.

If I continue to create and render and ROI, the whole volume gets compressed into the ROI, squishing it. (pics attached)

ORCID

0009-0002-7381-5748

Email

U2FsdGVkX19r9iP5XbEgkivLCu3eXsubUkLiL1UsOdc=

Confirm Email

U2FsdGVkX19r9iP5XbEgkivLCu3eXsubUkLiL1UsOdc=

[github-actions[bot]]

Instance Name

instance-69

The instance name is derived from the GitHub issue number using the template instance-NNN. The instance may also be located in the exosphere interface using this name.

[github-actions[bot]]

Volume Name

My-Data-69

The volume name is derived from the GitHub issue number using the template My-Data-NNN. The volume may also be located in the exosphere interface using this name.

[github-actions[bot]]

Supported Issue Commands

The commands described below may be added as issue comments. Only one command may be entered per comment.

Command	Description	Who
/shelve	Shelve the instance.	Issue creator, Admin
/unshelve	Unshelve the instance.	Issue creator, Admin
/encode_email	Update issue description obfuscating emails.	Issue creator, Admin
/decode_email	Update issue description deobfuscating emails.	Issue creator, Admin
/email	Send email to Issue creator with connection URL.	Issue creator, Admin
/create	Create the instance and associated volume.	Admin
/delete_instance	Delete the instance.	Admin
/delete_volume	Delete the volume.	Admin
/delete_all	Delete the instance and volume.	Admin

[morphocloud-workflow-app[bot]]

Workflow update-issue-from-workflow.yml triggered by validate-request.yml for command encodeemail

For details, see https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11808998413

[github-actions[bot]]

Validation Results

The validation checks have completed. Below is the status of each check:

Check	Status
ORCID iD format	✅
Email format	✅
Confirm Email format	✅
Emails match	✅

[!IMPORTANT] If the ORCID iD format is incorrect, edit the issue description to correct it.

If either email format is invalid or the emails do not match, please update the issue description accordingly.

[!TIP] Once the emails are correctly formatted and match, they will be automatically obfuscated for security.

See details at https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11808998413

[github-actions[bot]]

Command encodeemail issued by update-issue-from-workflow.yml workflow

For details, see https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11809000715

[github-actions[bot]]

Command Results ✅

encode_email command successfully applied to this issue.

[muratmaga]

/create

[github-actions[bot]]

Instance Creation Progress ⏳

Create IP	Create Volume	Create Instance	Associate IP	Setup Instance	Attach volume	Send Email
✅	✅	✅	✅	✅	✅	✅

See details at https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11809701914

[morphocloud-workflow-app[bot]]

Workflow control-instance-from-workflow.yml triggered by automatic-instance-shelving.yml for command shelve

For details, see https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11812347481_

[github-actions[bot]]

Command shelve issued by control-instance-from-workflow.yml workflow

For details, see https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11812349677_

[github-actions[bot]]

Command Results ✅

shelve command successfully applied to instance-69 instance.

See details at https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11812349677

[OwenProulx]

/unshelve

[github-actions[bot]]

Command Results ✅

unshelve command successfully applied to instance-69 instance.

See details at https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11822164617

[github-actions[bot]]

Command Results ✅

unshelve command successfully applied to instance-69 instance.

See details at https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11822193156

[morphocloud-workflow-app[bot]]

Workflow control-instance-from-workflow.yml triggered by automatic-instance-shelving.yml for command shelve

For details, see https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11825883659_

[github-actions[bot]]

Command shelve issued by control-instance-from-workflow.yml workflow

For details, see https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11825887620_

[github-actions[bot]]

Command Results ✅

shelve command successfully applied to instance-69 instance.

See details at https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11825887620

[muratmaga]

/delete_instance

[github-actions[bot]]

Command Results ✅

delete command successfully applied to instance-69 instance.

See details at https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11829752824

[muratmaga]

/create

[github-actions[bot]]

Instance Creation Progress ⏳

Create IP	Create Volume	Create Instance	Associate IP	Setup Instance	Attach volume	Send Email
✅	✅	✅	✅	✅	✅	✅

See details at https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11829758751

[github-actions[bot]]

Instance Creation Results ⚠️

Volume My-Data-69 already exists.

See details at https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11829758751

[muratmaga]

/shelve

[github-actions[bot]]

Command Results ✅

shelve command successfully applied to instance-69 instance.

See details at https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11829971320

[morphocloud-workflow-app[bot]]

Workflow control-instance-from-workflow.yml triggered by automatic-instance-shelving.yml for command shelve

For details, see https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11836410915_

[github-actions[bot]]

Command shelve issued by control-instance-from-workflow.yml workflow

For details, see https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11836415776_

[github-actions[bot]]

Command Results ✅

shelve command successfully applied to instance-69 instance.

See details at https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11836415776

[muratmaga]

/delete_all

[github-actions[bot]]

Command Results ✅

Volume My-Data-69 successfully deleted.

[github-actions[bot]]

Command Results ✅

delete command successfully applied to instance-69 instance.

See details at https://github.com/MorphoCloud/MorphoCloudInstances/actions/runs/11959440548