Skip sequences with ambiguous nucleotides

MorrellLAB / BAD_Mutations

Deleterious mutation prediction pipeline

MIT License

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Skip sequences with ambiguous nucleotides #33

Closed TomJKono closed 8 years ago

TomJKono commented 8 years ago

Do not align sequences that have ambiguous nucleotides, as they cause HyPhy errors.

TomJKono commented 8 years ago

Fixed in 0ed078759c555e90ae2bdfea79ea4e07bf52886a

HyPhy still chokes sometimes, so this doesn't fix the segfault issue. Ambiguous nucleotides can cause very strange alignments, though, so they should be removed anyway.