Open mojaveazure opened 9 years ago
Using the latest version from GitHub:
hoffmanp@login02 [~/sandbox/LRT_Pipeline/LRT] % ./LRT_Predict.py fetch
Traceback (most recent call last):
File "./LRT_Predict.py", line 36, in
Not able to run fetch on login where we have internet access because it requires BioPython.
You should be able to run this package from one of the lab nodes. I'm running the 'fetch' routine right now and it is downloading CDS files.
At least ensembl
When fetching, it checks for BioPython being installed. On MSI's setup, this breaks the script as it won't fetch on LAB and LOGIN doesn't have BioPython readily available.