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MorrellLAB / BAD_Mutations

Deleterious mutation prediction pipeline
MIT License
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Missing sequence in fasta file #9

Closed fayjustin closed 8 years ago

fayjustin commented 8 years ago

makeblastdb fails when sequence is missing from fasta file. This affects: Hordeum_vulgare.082214v1.29.cds.all.fa.20151105_makeblastdb_err Leersia_perrieri.Lperr_V1.4.29.cds.all.fa.20151105_makeblastdb_err

TomJKono commented 8 years ago

I'll look into why these files are failing to be made into BLAST databases. They look like normal files but I may have to do some checks for consistency.

fayjustin commented 8 years ago

There are missing proteins: header but not sequence. Once removed the the database can be made.

On Sun, Nov 8, 2015 at 4:53 PM, Tom Kono notifications@github.com wrote:

I'll look into why these files are failing to be made into BLAST databases. They look like normal files but I may have to do some checks for consistency.

— Reply to this email directly or view it on GitHub https://github.com/MorrellLAB/BAD_Mutations/issues/9#issuecomment-154883914 .

Justin Fay Associate Professor of Genetics Washington University School of Medicine Rm 5526, Center for Genome Sciences 4444 Forest Park Pkwy, St. Louis, MO 63108 Ph: 314.747.1808 Fax: 314.362.7855

TomJKono commented 8 years ago

Fixed in e24ea8e02f6d599a61e72f57638ce792a4dc34e6