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Morteza-M-Saber / BacGWASim

A Simulator for Bacterial Machine learning and Genome-Wide Association Studies
MIT License
21 stars 5 forks source link

How to run the pipeline? #17

Open sekhwal opened 1 year ago

sekhwal commented 1 year ago

I was trying to run the pipeline but I could not find any instructions on how to use it. Please suggest how to prepare input data and run it. Thank you,

stefanogg commented 1 year ago

Hi, the pipeline is very easy to run if installed with conda. If you run BacGWASim without any argument, it will run the program with default parameters. You can easily change the parameters by modifying the config.yaml file

stefanogg commented 1 year ago

You dont' need any input data. It is a simulator