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MoseleyBioinformaticsLab / GOcats

A tool for categorizing Gene Ontology into subgraphs of user-defined emergent concepts
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gocats handles gaf 2.2 #15

Open rmflight opened 3 years ago

rmflight commented 3 years ago

I see that GO is announcing retiring of GAF v 2.1, and I think gocats is handling the 2.2 format, but it would be good to be 100% sure

https://geneontology.github.io/docs/go-annotation-file-gaf-format-2.2/

ehinderer commented 3 years ago

Thanks for bringing that to my attention. I'll double check that as part of this 1.1.8 release along with the rGAF additions #14

ehinderer commented 3 years ago

Oddly enough, the current goa_human.gaf available on EBI is still in v2.1. I'll still make sure it's compatible with 2.2.

ehinderer commented 2 years ago

Never got around to this, apologies. I will revisit soon.

ehinderer commented 2 years ago

Beyond changes to GAF, there is a change to the .obo format as well that make all post 2019 ontology files broken as well. Need to fix both things.

hunter-moseley commented 2 years ago

Thanks Eugene!

On Thu, Aug 18, 2022 at 12:26 PM Eugene Hinderer @.***> wrote:

Beyond changes to GAF, there is a change to the .obo format as well that make all post 2019 ontology files broken as well. Need to fix both things.

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