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Mouse-Imaging-Centre / RMINC

Statistics for MINC volumes: A library to integrate voxel-based statistics for MINC volumes into the R environment. Supports getting and writing of MINC volumes, running voxel-wise linear models, correlations, etc.; correcting for multiple comparisons using the False Discovery Rate, and more. With contributions from Jason Lerch, Chris Hammill, Jim Nikelski and Matthijs van Eede. Some additional information can be found here:
https://mouse-imaging-centre.github.io/RMINC
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Using the hierarchy in anatGetAll? #135

Closed gdevenyi closed 7 years ago

gdevenyi commented 7 years ago

With the more recent DSU and DSUR atlases there are many regions segmented which aren't really distinguishable (or interesting) on a given in-vivio scan.

The atlas CSV files define a hierarchy which combine other labels, but I can't find a place for RMINC to use it.

Is this feature available, or is there a script available to take advantage of this? Thanks!

cfhammill commented 7 years ago

Didn't push the meat of the fix. Should be up now.

gdevenyi commented 7 years ago

Fixed.

Thanks so much, this makes the latest mouse MAGeT infinitely more useful.

cfhammill commented 7 years ago

No problem, thanks for all the help debugging!