FEATURE REQUEST: Support vertstat format?

Mouse-Imaging-Centre / RMINC

Statistics for MINC volumes: A library to integrate voxel-based statistics for MINC volumes into the R environment. Supports getting and writing of MINC volumes, running voxel-wise linear models, correlations, etc.; correcting for multiple comparisons using the False Discovery Rate, and more. With contributions from Jason Lerch, Chris Hammill, Jim Nikelski and Matthijs van Eede. Some additional information can be found here:

https://mouse-imaging-centre.github.io/RMINC

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FEATURE REQUEST: Support vertstat format? #69

Open gdevenyi opened 8 years ago

gdevenyi commented 8 years ago

The older mni.cortical.statistics tool could write out a file with a header, which brain-view, and other MNI vertstat* programs could understand.

It would be nice if RMINC could save in that format as well.

cfhammill commented 8 years ago

Can you give me a reference to the file format? I can investigate adding support for this

gdevenyi commented 8 years ago

Yeah sure, the mni.write.vertex.stats command in http://packages.bic.mni.mcgill.ca/tgz/mni_cortical_statistics-0.9.4.tar.gz implements saving in that format

This looks like the documentation of the format https://github.com/BIC-MNI/oobicpl/tree/master/docs (uncompiled)

gdevenyi commented 6 years ago

Example file attached meta_analysis_right_thickness_DX_M3_C.vertstats.gz