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Mouse-Imaging-Centre / pydpiper

Python code for flexible pipeline control
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Example data with "robust" effect? #256

Open gdevenyi opened 7 years ago

gdevenyi commented 7 years ago

Hi,

Is there some simple example data around? I'm teaching a seminar on pydpiper and I'd like to have a simplified dataset to process/present. Thanks!

mcvaneede commented 7 years ago

As a test pipeline, we generally run this script:

https://github.com/Mouse-Imaging-Centre/pydpiper/blob/master/pydpiper_testing/test_MBM_and_MAGeT.py

The data for it is located here (there are some comments at the top of the script):

repo.mouseimaging.ca/repo/Pydpiper_test_files/test-data.tar.gz

I know that Ben has been working on new test sets that incorporate changes in multiple areas of the brain. This data set only has changes in the striatum. Ben, should we upload your latest data sets somewhere?