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Mouse-Imaging-Centre / pydpiper

Python code for flexible pipeline control
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pydpiper 2.0.12 --help for common space is wrong #392

Closed gdevenyi closed 5 years ago

gdevenyi commented 5 years ago 
common_space:
  --common-space-model COMMON_SPACE_MODEL
                        Run MAGeT segmentation on the images.
  --common-space-mask COMMON_SPACE_MASK
                        Mask for common space model
  --common-space-registration
                        Do registration to common (db) space. [default]
  --no-common-space-registration
                        Skip registration to common (db) space.

Note "MAGeT" being mentioned

gdevenyi commented 5 years ago

Also, help is misleading on the default configuration

https://github.com/Mouse-Imaging-Centre/pydpiper/blob/master/pydpiper/pipelines/MBM.py#L469-L472

bcdarwin commented 5 years ago

Fixed in develop.

From: Gabriel A. Devenyi notifications@github.com Sent: November 9, 2018 12:48:02 PM To: Mouse-Imaging-Centre/pydpiper Cc: Subscribed Subject: Re: [Mouse-Imaging-Centre/pydpiper] pydpiper 2.0.12 --help for common space is wrong (#392)

Also, help is misleading on the default configuration

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