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Mouse-Imaging-Centre / pydpiper

Python code for flexible pipeline control
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twolevel_model_building.py + MAGeT produces a ton of per-scan directories in outputdir #402

Open gdevenyi opened 5 years ago

gdevenyi commented 5 years ago

Example:

$ ls
110_009_atlases/  150_005_atlases/  180_006_atlases/  210_003_atlases/  240_001_atlases/  260_002_atlases/  logs/
110_010_atlases/  150_006_atlases/  180_007_atlases/  210_004_atlases/  240_002_atlases/  260_003_atlases/  analysis.csv
110_011_atlases/  150_007_atlases/  180_008_atlases/  210_005_atlases/  240_003_atlases/  280_001_atlases/  overall_determinants.csv
110_013_atlases/  150_008_atlases/  180_009_atlases/  210_006_atlases/  240_004_atlases/  280_002_atlases/  paths_ID.csv
110_014_atlases/  160_005_atlases/  190_003_atlases/  210_007_atlases/  240_005_atlases/  280_003_atlases/  pipeline.log
130_006_atlases/  160_006_atlases/  190_005_atlases/  210_008_atlases/  250_001_atlases/  280_004_atlases/  resampled_determinants.csv
130_007_atlases/  170_003_atlases/  190_006_atlases/  230_001_atlases/  250_002_atlases/  280_005_atlases/  run_twolevel.sh
140_006_atlases/  170_004_atlases/  190_007_atlases/  230_003_atlases/  250_003_atlases/  290_001_atlases/
140_007_atlases/  170_005_atlases/  210_001_atlases/  230_004_atlases/  250_004_atlases/  290_002_atlases/
140_008_atlases/  170_006_atlases/  210_002_atlases/  230_005_atlases/  260_001_atlases/  log/

Probably needs its own top-level dir and it of course needs to be prefixed with the pipeline name.