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Mouse-Imaging-Centre / pydpiper

Python code for flexible pipeline control
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--resolution option should resample rather than autocrop mask #405

Open gdevenyi opened 5 years ago

gdevenyi commented 5 years ago

autocrop has a few flaky bits

  1. It isn't' guaranteed to do the same thing everytime: https://github.com/BIC-MNI/mni_autoreg/issues/12
  2. It doesn't properly handle label values https://gist.github.com/pipitone/b8bea7ee287e9de50a5c