Mouse-Imaging-Centre / pydpiper

Python code for flexible pipeline control
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Document/publish pydpiper resources #412

Open gdevenyi opened 5 years ago

gdevenyi commented 5 years ago

MiCE has produced a number of really nicely delineated mouse atlases, but they're released somewhat separate from pydpiper. It would be nice if pydpiper pointed at them.

Some of the reasoning, coming soon from the CIC: "Ratlas: An MRI-Derived Neuroanatomical Atlas of the Fischer 344 Rat Brain"

We'd like to make sure that pydpiper people realize it exists.

bcdarwin commented 5 years ago

We could certainly include the Dorr 2008 atlas. We don't publicly host the DSURQE atlas since not all the relevant work is published yet (but give it to basically anyone who asks). Of course, there's also the Allen atlas ...

We have a primitive ratlas but we'd definitely appreciate hearing more about yours!


From: Gabriel A. Devenyi notifications@github.com Sent: November 22, 2018 4:03:35 PM To: Mouse-Imaging-Centre/pydpiper Cc: Subscribed Subject: [Mouse-Imaging-Centre/pydpiper] Document/publish pydpiper resources (#412)

MiCE has produced a number of really nicely delineated mouse atlases, but they're released somewhat separate from pydpiper. It would be nice if pydpiper pointed at them.

Some of the reasoning, coming soon from the CIC: "Ratlas: An MRI-Derived Neuroanatomical Atlas of the Fischer 344 Rat Brain"

We'd like to make sure that pydpiper people realize it exists.

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gdevenyi commented 5 years ago

I'll follow up with a preprint as soon as the co-authors finish feedback and fixes.

gdevenyi commented 5 years ago

https://www.nearlab.xyz/fischer344atlas

bcdarwin commented 5 years ago

I downloaded this Feb. 22nd ... will it have changed since then (hopefully only if it was considered unreleased then)? Thanks!

gdevenyi commented 5 years ago

Nope! Forgot I told you :-)