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Mouse-Imaging-Centre / pydpiper

Python code for flexible pipeline control
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twolevel_model_building imports the input csv twice #414

Open nzxwang opened 5 years ago

nzxwang commented 5 years ago

It may be better to import the input csv once, then use the assign() method for all stages, then drop unnecessary columns when finally writing the output csv.

Similar to: https://github.com/Mouse-Imaging-Centre/MICe-lab/blob/99b5a1fd1a7d45dde044b4532d1f9211ad72ec92/python/tissue_vision/TV_pipeline.py#L123

Reference: 5920e09a9a23bc6e976d74231ba0ef29f675749f