Mouse-Imaging-Centre / pydpiper

Python code for flexible pipeline control
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pydpiper only takes one lsq12 protocol #429

Closed nzxwang closed 4 years ago

nzxwang commented 4 years ago

ValueError:

You have specified a different lsq12 protocol for MAGeT as compared to the lsq12 protocol for the main registration:

--maget-lsq12-protocol /hpf/largeprojects/MICe/nwang/collaborator_40um/2019-06-21_Picketts_Snf2H-Snf2L/linear_MAGeT_prot.csv --lsq12-protocol /hpf/largeprojects/MICe/tools/protocols/linear/Pydpiper_testing_default_lsq12.csv

One lsq12 protocol can be used for both parts of the pipeline. Please decide which of the two you want to use, and specify only that one using the --lsq12-protocol flag.

bcdarwin commented 4 years ago

duplicate of #266