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Mouse-Imaging-Centre / pydpiper

Python code for flexible pipeline control
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Request: improve documentation of smart restart #430

Closed gdevenyi closed 4 years ago

gdevenyi commented 4 years ago

I would like to rerun a pipeline using a different maget label input, but the same atlas.

I think smart restart can handle this, but I'm not sure. I think the docs could be improved here a bit.

nzxwang commented 4 years ago

This should work automatically without smart-restart as the maget label inputs are arguments for mincresample and voxel_vote. Since the atlas is the same, the registration will stay the same as you would want and pydpiper will restart from voxel_vote stages.

I guess I will change the documentation for --restart to better reflect its behaviour.