Mouse-Imaging-Centre / pyminc

A python interface to the MINC 2 library, allowing use of numpy arrays to access MINC data, and other such similar goodies, developed by Jason Lerch
http://en.wikibooks.org/wiki/MINC/Tutorials
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Cannot find libminc2.so #26

Closed yohanyee closed 6 years ago

yohanyee commented 7 years ago

If libminc2.so is already installed on the system and when installing pyminc via pip in Anaconda, the installation completes with no errors but importing pyminc results in an error related to finding libminc2.so . The issue is with the path to the library, which I fixed by symlinking ${ANACONDA_INSTALL_PATH}/lib/libminc2.so to /usr/lib/x86_64-linux-gnu/libminc2.so.4.0.0 . Can this step be added in the install process?

gdevenyi commented 7 years ago

Sounds like an issue with LD_LIBRARY_PATH

bcdarwin commented 7 years ago

I don't exactly understand what has gone wrong with your installation but I'm reluctant to add such ad hoc steps to the installation process.


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Sounds like an issue with LD_LIBRARY_PATH

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maximedieudonne commented 4 years ago

I had the same issus. This step works for me : export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/minc/1.9.17/lib (if you use minctoolkit v2)

gdevenyi commented 4 years ago

You have not run the "source" command specified for use of the minc-toolkit after install