Kilosort 2.5: Support for neuroshare file format?

MouseLand / Kilosort

Fast spike sorting with drift correction

https://kilosort.readthedocs.io/en/latest/

GNU General Public License v3.0

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Kilosort 2.5: Support for neuroshare file format? #282

Closed vatsunlab closed 9 months ago

vatsunlab commented 4 years ago

Thank you for this spike sorter! Do you support the .ns5 file format that is used by Blackrock and Ripple neural data acquisition systems? Alternatively, is there an easy way to convert these files into a *.bin or other format that Kilosort 2.5 can read? Thanks so much for your help!

marius10p commented 4 years ago

Others may have made such converters, but if you know how to get your data out of the proprietary ns5 format, then it should be straightforward to convert to a flat int16 binary file.

chris-angeloni commented 3 years ago

This may complicate your pipeline a bit, but it looks like spike interface has support for Blackrock recordings: https://spikeinterface.readthedocs.io/en/latest/supported.html