ryanlash2
commented
1 year ago `Nchannels = 64; connected = true(Nchannels, 1);
%channel map is based on adding one to the intan value for channel IDs since matlab doesn't index from zero chanMap = [12, 13, 8, 30, 32, 16, 15, 6, 27, 20, 5, 26, 4, 21, 9, 1,... 29, 19, 14, 28, 24, 31, 22, 7, 18, 10, 2, 23, 3, 17, 25, 11,... 63, 62, 39, 47, 36, 61, 33, 57, 49, 41, 51, 34, 37, 59, 46, 54,... 40, 52, 56, 60, 43, 38, 55, 42, 45, 64, 50, 35, 53, 44, 58, 48] chanMap0ind = chanMap - 1; bad_channels = [12,48]; connected(bad_channels) = false;
xcoords =[0ones(16,1); 22.5ones(16,1); 250ones(16,1); 272.5ones(16,1)]; xcoords = zeros(Nchannels, 1); xcoords(chanMap) =xcoords; % xcoords =xcoords_d(chanMap) ycoords =[(cumsum(25ones(16,1))-25); (cumsum(25ones(16,1))-12.5); (cumsum(25ones(16,1))-25); (cumsum(25ones(16,1))-12.5)]; ycoords = zeros(Nchannels, 1); ycoords(chanMap) = ycoords; % ycoords =ycoords_d(chanMap) kcoords = ones(Nchannels,1);`
Hello All!
I have been having trouble getting my chanMap config file to translate correctly to kilosort. I'm using the bad channels to emphasize the issue that the gui isn't properly indexing the channels as seen in the image. I'm using a cambridge neurotech h6 molex probe 64channel 2shank(32 each). It correctly recognizes the coordinates just not the channel IDs. Any advice? `Nchannels = 64; connected = true(Nchannels, 1);
%channel map is based on adding one to the intan value for channel IDs since matlab doesn't index from zero chanMap = [12, 13, 8, 30, 32, 22, 15, 6, 27, 20, 5, 26, 4, 21, 9, 1, ... 29, 19, 14, 28, 24, 31, 22, 7, 18, 10, 2, 23, 3, 17, 25, 11, ... 63, 62, 39, 47, 36, 61, 33, 57, 49, 41, 51, 34, 37, 59, 46, 54, ... 40, 52, 56, 60, 43, 38, 55, 42, 45, 64, 50, 35, 53, 44, 58, 48]; chanMap0ind = chanMap - 1; bad_channels = [12,48]; connected(bad_channels) = false;
xcoords = [0ones(16,1); 22.5ones(16,1); 250ones(16,1); 272.5ones(16,1)]; xcoords = xcoords(:); ycoords =[(cumsum(25ones(16,1))-25); (cumsum(25ones(16,1))-12.5); (cumsum(25ones(16,1))-25); (cumsum(25ones(16,1))-12.5);] ycoords = ycoords(:); kcoords = ones(Nchannels,1); % grouping of channels (i.e. tetrode groups)
fs = 20000; % sampling frequency `