MouseLand / Kilosort

Fast spike sorting with drift correction
https://kilosort.readthedocs.io/en/latest/
GNU General Public License v3.0
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Update README.md #754

Closed nacefguessaymi closed 3 months ago

nacefguessaymi commented 3 months ago

Correction for using the zsh command Should simply be python -m pip install "kilosort[gui]"

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jacobpennington commented 3 months ago

@nacefguessaymi Can you please clarify if you tried the same thing with only single quotes? From the error messages it looks like you entered: "python -m pip install 'kilosort[gui]'" when it should be python -m pip install 'kilosort[gui]' (or with double quotes only like the one that worked for you) But I can't tell for sure if those double quotes were just added by the error message.

nacefguessaymi commented 3 months ago

@jacobpennington thanks for replying to this! To answer your comment I was trying random commands until I got it to work. I think there was some sort of formatting mistake in the tutorial so it looked like this: Screenshot 2024-08-12 at 4 29 36 PM The correct command should be python -m pip install "kilosort[gui]" or python -m pip install 'kilosort[gui]'. zsh reads square brackets as a some sort string input parser and using the single or double quotations makes it read it as a string.

jacobpennington commented 3 months ago

Ah, I see: thanks!