MouseLand / Kilosort

Fast spike sorting with drift correction for up to a thousand channels
https://kilosort.readthedocs.io/en/latest/
GNU General Public License v3.0
457 stars 239 forks source link

FEATURE: Support very long chronic recordings #779

Open alejoe91 opened 2 weeks ago

alejoe91 commented 2 weeks ago

Feature you'd like to see:

Hi guys,

We're currently trying to/aiming to run spike sorting on very long recordings (>10h, ultimately weeks/months long continuous data), and we are experiencing out of memory issues at the optimizing templates stage.

Do you have any plans to support such long datasets? E.g., by caching spike times/amplitudes as they are fit to disk?

Additional Context

No response

jacobpennington commented 2 weeks ago

Yes, support for long chronic recordings is our main development goal right now.

On Mon, Sep 9, 2024, 8:49 AM Alessio Buccino @.***> wrote:

Feature you'd like to see:

Hi guys,

We're currently trying to/aiming to run spike sorting on very long recordings (>10h, ultimately weeks/months long continuous data), and we are experiencing out of memory issues at the optimizing templates stage.

Do you have any plans to support such long datasets? E.g., by caching spike times/amplitudes as they are fit to disk? Additional Context

No response

— Reply to this email directly, view it on GitHub https://github.com/MouseLand/Kilosort/issues/779, or unsubscribe https://github.com/notifications/unsubscribe-auth/AIQ6WYEMLCXQHNSRO5NJI2LZVW7SFAVCNFSM6AAAAABN43BZBWVHI2DSMVQWIX3LMV43ASLTON2WKOZSGUYTIMZSGIYDIMA . You are receiving this because you are subscribed to this thread.Message ID: @.***>

alejoe91 commented 2 weeks ago

Let us know if you need any help! :)