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MouseLand / cellpose

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
https://www.cellpose.org/
BSD 3-Clause "New" or "Revised" License
1.38k stars 393 forks source link

[INSTALL] This plugin does not support propagateSizeHints() #1012

Open chen000701 opened 1 month ago

chen000701 commented 1 month ago

Install problem TORCH CUDA version installed and working. This plugin does not support propagateSizeHints()

Environment info _libgcc_mutex 0.1 main _openmp_mutex 5.1 1_gnu blas 1.0 mkl brotli-python 1.0.9 py38h6a678d5_8 bzip2 1.0.8 h5eee18b_6 ca-certificates 2024.7.2 h06a4308_0 cellpose 3.0.12.dev87+g52f75f9 pypi_0 pypi certifi 2024.8.30 py38h06a4308_0 charset-normalizer 3.3.2 pyhd3eb1b0_0 cudatoolkit 11.3.1 h2bc3f7f_2 fastremap 1.15.0 pypi_0 pypi ffmpeg 4.3 hf484d3e_0 pytorch freetype 2.12.1 h4a9f257_0 gmp 6.2.1 h295c915_3 gnutls 3.6.15 he1e5248_0 idna 3.7 py38h06a4308_0 imagecodecs 2023.3.16 pypi_0 pypi imageio 2.35.1 pypi_0 pypi importlib-metadata 8.5.0 pypi_0 pypi intel-openmp 2021.4.0 h06a4308_3561 jpeg 9e h5eee18b_3 lame 3.100 h7b6447c_0 lazy-loader 0.4 pypi_0 pypi lcms2 2.12 h3be6417_0 ld_impl_linux-64 2.38 h1181459_1 lerc 3.0 h295c915_0 libdeflate 1.17 h5eee18b_1 libffi 3.3 he6710b0_2 libgcc-ng 11.2.0 h1234567_1 libgomp 11.2.0 h1234567_1 libiconv 1.16 h5eee18b_3 libidn2 2.3.4 h5eee18b_0 libpng 1.6.39 h5eee18b_0 libstdcxx-ng 11.2.0 h1234567_1 libtasn1 4.19.0 h5eee18b_0 libtiff 4.5.1 h6a678d5_0 libunistring 0.9.10 h27cfd23_0 libwebp-base 1.3.2 h5eee18b_0 llvmlite 0.41.1 pypi_0 pypi lz4-c 1.9.4 h6a678d5_1 mkl 2021.4.0 h06a4308_640 mkl-service 2.4.0 py38h7f8727e_0 mkl_fft 1.3.1 py38hd3c417c_0 mkl_random 1.2.2 py38h51133e4_0 natsort 8.4.0 pypi_0 pypi ncurses 6.4 h6a678d5_0 nettle 3.7.3 hbbd107a_1 networkx 3.1 pypi_0 pypi numba 0.58.1 pypi_0 pypi numpy 1.24.3 py38h14f4228_0 numpy-base 1.24.3 py38h31eccc5_0 opencv-python-headless 4.10.0.84 pypi_0 pypi openh264 2.1.1 h4ff587b_0 openjpeg 2.5.2 he7f1fd0_0 openssl 1.1.1w h7f8727e_0 packaging 24.1 pypi_0 pypi pillow 10.4.0 py38h5eee18b_0 pip 24.2 py38h06a4308_0 pygments 2.18.0 pypi_0 pypi pyqt6 6.7.1 pypi_0 pypi pyqt6-qt6 6.7.2 pypi_0 pypi pyqt6-sip 13.8.0 pypi_0 pypi pyqtgraph 0.13.3 pypi_0 pypi pysocks 1.7.1 py38h06a4308_0 python 3.8.5 h7579374_1 pytorch 1.12.1 py3.8_cuda11.3_cudnn8.3.2_0 pytorch pytorch-mutex 1.0 cuda pytorch pywavelets 1.4.1 pypi_0 pypi qtpy 2.4.1 pypi_0 pypi readline 8.2 h5eee18b_0 requests 2.32.3 py38h06a4308_0 roifile 2023.5.12 pypi_0 pypi scikit-image 0.21.0 pypi_0 pypi scipy 1.10.1 pypi_0 pypi setuptools 75.1.0 py38h06a4308_0 six 1.16.0 pyhd3eb1b0_1 sqlite 3.45.3 h5eee18b_0 superqt 0.6.7 pypi_0 pypi tifffile 2023.7.10 pypi_0 pypi tk 8.6.14 h39e8969_0 torchaudio 0.12.1 py38_cu113 pytorch torchvision 0.13.1 py38_cu113 pytorch tqdm 4.66.5 pypi_0 pypi typing_extensions 4.11.0 py38h06a4308_0 urllib3 2.2.2 py38h06a4308_0 wheel 0.44.0 py38h06a4308_0 xz 5.4.6 h5eee18b_1 zipp 3.20.2 pypi_0 pypi zlib 1.2.13 h5eee18b_1 zstd 1.5.5 hc292b87_2

Run log 2024-09-19 14:12:46,761 [INFO] WRITING LOG OUTPUT TO /home/shenpengxiu/.cellpose/run.log 2024-09-19 14:12:46,762 [INFO] cellpose version: 3.0.8 platform: linux python version: 3.8.16 torch version: 1.11.0 2024-09-19 14:12:56,246 [INFO] TORCH CUDA version installed and working. 

logger = io.logger_setup()

before running any Cellpose functions.

chen000701 commented 1 month ago

(cellpose) shenpengxiu@implab6:/media/Data/spx$ python -m cellpose 2024-09-19 15:14:24,843 [INFO] WRITING LOG OUTPUT TO /home/shenpengxiu/.cellpose/run.log 2024-09-19 15:14:24,843 [INFO] cellpose version: 3.0.12.dev87+g52f75f9 platform: linux python version: 3.8.5 torch version: 1.12.1 qt.core.plugin.factoryloader: checking directory path "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/platforms" ... qt.core.plugin.factoryloader: looking at "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/platforms/libqxcb.so" qt.core.plugin.loader: Found metadata in lib /media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/platforms/libqxcb.so, metadata= { "IID": "org.qt-project.Qt.QPA.QPlatformIntegrationFactoryInterface.5.3", "MetaData": { "Keys": [ "xcb" ] }, "archlevel": 1, "className": "QXcbIntegrationPlugin", "debug": false, "version": 395008 }

qt.core.plugin.factoryloader: Got keys from plugin meta data QList("xcb") qt.core.plugin.factoryloader: looking at "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/platforms/libqeglfs.so" qt.core.plugin.loader: Found metadata in lib /media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/platforms/libqeglfs.so, metadata= { "IID": "org.qt-project.Qt.QPA.QPlatformIntegrationFactoryInterface.5.3", "MetaData": { "Keys": [ "eglfs" ] }, "archlevel": 1, "className": "QEglFSIntegrationPlugin", "debug": false, "version": 395008 }

qt.core.plugin.factoryloader: Got keys from plugin meta data QList("eglfs") qt.core.plugin.factoryloader: looking at "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/platforms/libqlinuxfb.so" qt.core.plugin.loader: Found metadata in lib /media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/platforms/libqlinuxfb.so, metadata= { "IID": "org.qt-project.Qt.QPA.QPlatformIntegrationFactoryInterface.5.3", "MetaData": { "Keys": [ "linuxfb" ] }, "archlevel": 1, "className": "QLinuxFbIntegrationPlugin", "debug": false, "version": 395008 }

qt.core.plugin.factoryloader: Got keys from plugin meta data QList("linuxfb") qt.core.plugin.factoryloader: looking at "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/platforms/libqminimal.so" qt.core.plugin.loader: Found metadata in lib /media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/platforms/libqminimal.so, metadata= { "IID": "org.qt-project.Qt.QPA.QPlatformIntegrationFactoryInterface.5.3", "MetaData": { "Keys": [ "minimal" ] }, "archlevel": 1, "className": "QMinimalIntegrationPlugin", "debug": false, "version": 395008 }

qt.core.plugin.factoryloader: Got keys from plugin meta data QList("minimal") qt.core.plugin.factoryloader: looking at "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/platforms/libqvkkhrdisplay.so" qt.core.plugin.loader: Found metadata in lib /media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/platforms/libqvkkhrdisplay.so, metadata= { "IID": "org.qt-project.Qt.QPA.QPlatformIntegrationFactoryInterface.5.3", "MetaData": { "Keys": [ "vkkhrdisplay" ] }, "archlevel": 1, "className": "QVkKhrDisplayIntegrationPlugin", "debug": false, "version": 395008 }

qt.core.plugin.factoryloader: Got keys from plugin meta data QList("vkkhrdisplay") qt.core.plugin.factoryloader: looking at "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/platforms/libqoffscreen.so" qt.core.plugin.loader: Found metadata in lib /media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/platforms/libqoffscreen.so, metadata= { "IID": "org.qt-project.Qt.QPA.QPlatformIntegrationFactoryInterface.5.3", "MetaData": { "Keys": [ "offscreen" ] }, "archlevel": 1, "className": "QOffscreenIntegrationPlugin", "debug": false, "version": 395008 }

qt.core.plugin.factoryloader: Got keys from plugin meta data QList("offscreen") qt.core.plugin.factoryloader: looking at "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/platforms/libqwayland-generic.so" qt.core.plugin.loader: Found metadata in lib /media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/platforms/libqwayland-generic.so, metadata= { "IID": "org.qt-project.Qt.QPA.QPlatformIntegrationFactoryInterface.5.3", "MetaData": { "Keys": [ "wayland" ] }, "archlevel": 1, "className": "QWaylandIntegrationPlugin", "debug": false, "version": 395008 }

qt.core.plugin.factoryloader: Got keys from plugin meta data QList("wayland") qt.core.plugin.factoryloader: looking at "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/platforms/libqwayland-egl.so" qt.core.plugin.loader: Found metadata in lib /media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/platforms/libqwayland-egl.so, metadata= { "IID": "org.qt-project.Qt.QPA.QPlatformIntegrationFactoryInterface.5.3", "MetaData": { "Keys": [ "wayland-egl" ] }, "archlevel": 1, "className": "QWaylandEglPlatformIntegrationPlugin", "debug": false, "version": 395008 }

qt.core.plugin.factoryloader: Got keys from plugin meta data QList("wayland-egl") qt.core.plugin.factoryloader: looking at "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/platforms/libqminimalegl.so" qt.core.plugin.loader: Found metadata in lib /media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/platforms/libqminimalegl.so, metadata= { "IID": "org.qt-project.Qt.QPA.QPlatformIntegrationFactoryInterface.5.3", "MetaData": { "Keys": [ "minimalegl" ] }, "archlevel": 1, "className": "QMinimalEglIntegrationPlugin", "debug": false, "version": 395008 }

qt.core.plugin.factoryloader: Got keys from plugin meta data QList("minimalegl") qt.core.plugin.factoryloader: looking at "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/platforms/libqvnc.so" qt.core.plugin.loader: Found metadata in lib /media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/platforms/libqvnc.so, metadata= { "IID": "org.qt-project.Qt.QPA.QPlatformIntegrationFactoryInterface.5.3", "MetaData": { "Keys": [ "vnc" ] }, "archlevel": 1, "className": "QVncIntegrationPlugin", "debug": false, "version": 395008 }

qt.core.plugin.factoryloader: Got keys from plugin meta data QList("vnc") qt.core.plugin.factoryloader: checking directory path "/media/Data/spx/miniconda3/envs/cellpose/bin/platforms" ... qt.core.library: "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/platforms/libqoffscreen.so" loaded library qt.core.plugin.factoryloader: checking directory path "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/platformthemes" ... qt.core.plugin.factoryloader: looking at "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/platformthemes/libqxdgdesktopportal.so" qt.core.plugin.loader: Found metadata in lib /media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/platformthemes/libqxdgdesktopportal.so, metadata= { "IID": "org.qt-project.Qt.QPA.QPlatformThemeFactoryInterface.5.1", "MetaData": { "Keys": [ "xdgdesktopportal", "flatpak", "snap" ] }, "archlevel": 1, "className": "QXdgDesktopPortalThemePlugin", "debug": false, "version": 395008 }

qt.core.plugin.factoryloader: Got keys from plugin meta data QList("xdgdesktopportal", "flatpak", "snap") qt.core.plugin.factoryloader: looking at "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/platformthemes/libqgtk3.so" qt.core.plugin.loader: Found metadata in lib /media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/platformthemes/libqgtk3.so, metadata= { "IID": "org.qt-project.Qt.QPA.QPlatformThemeFactoryInterface.5.1", "MetaData": { "Keys": [ "gtk3" ] }, "archlevel": 1, "className": "QGtk3ThemePlugin", "debug": false, "version": 395008 }

qt.core.plugin.factoryloader: Got keys from plugin meta data QList("gtk3") qt.core.plugin.factoryloader: checking directory path "/media/Data/spx/miniconda3/envs/cellpose/bin/platformthemes" ... qt.core.plugin.factoryloader: checking directory path "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/styles" ... qt.core.plugin.factoryloader: checking directory path "/media/Data/spx/miniconda3/envs/cellpose/bin/styles" ... qt.core.plugin.factoryloader: checking directory path "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/iconengines" ... qt.core.plugin.factoryloader: looking at "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/iconengines/libqsvgicon.so" qt.core.plugin.loader: Found metadata in lib /media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/iconengines/libqsvgicon.so, metadata= { "IID": "org.qt-project.Qt.QIconEngineFactoryInterface", "MetaData": { "Keys": [ "svg", "svgz", "svg.gz" ] }, "archlevel": 1, "className": "QSvgIconPlugin", "debug": false, "version": 395008 }

qt.core.plugin.factoryloader: Got keys from plugin meta data QList("svg", "svgz", "svg.gz") qt.core.plugin.factoryloader: checking directory path "/media/Data/spx/miniconda3/envs/cellpose/bin/iconengines" ... qt.core.plugin.factoryloader: checking directory path "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/imageformats" ... qt.core.plugin.factoryloader: looking at "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/imageformats/libqsvg.so" qt.core.plugin.loader: Found metadata in lib /media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/imageformats/libqsvg.so, metadata= { "IID": "org.qt-project.Qt.QImageIOHandlerFactoryInterface", "MetaData": { "Keys": [ "svg", "svgz" ], "MimeTypes": [ "image/svg+xml", "image/svg+xml-compressed" ] }, "archlevel": 1, "className": "QSvgPlugin", "debug": false, "version": 395008 }

qt.core.plugin.factoryloader: Got keys from plugin meta data QList("svg", "svgz") qt.core.plugin.factoryloader: looking at "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/imageformats/libqtiff.so" qt.core.plugin.loader: Found metadata in lib /media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/imageformats/libqtiff.so, metadata= { "IID": "org.qt-project.Qt.QImageIOHandlerFactoryInterface", "MetaData": { "Keys": [ "tiff", "tif" ], "MimeTypes": [ "image/tiff", "image/tiff" ] }, "archlevel": 1, "className": "QTiffPlugin", "debug": false, "version": 395008 }

qt.core.plugin.factoryloader: Got keys from plugin meta data QList("tiff", "tif") qt.core.plugin.factoryloader: looking at "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/imageformats/libqwebp.so" qt.core.plugin.loader: Found metadata in lib /media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/imageformats/libqwebp.so, metadata= { "IID": "org.qt-project.Qt.QImageIOHandlerFactoryInterface", "MetaData": { "Keys": [ "webp" ], "MimeTypes": [ "image/webp" ] }, "archlevel": 1, "className": "QWebpPlugin", "debug": false, "version": 395008 }

qt.core.plugin.factoryloader: Got keys from plugin meta data QList("webp") qt.core.plugin.factoryloader: looking at "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/imageformats/libqwbmp.so" qt.core.plugin.loader: Found metadata in lib /media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/imageformats/libqwbmp.so, metadata= { "IID": "org.qt-project.Qt.QImageIOHandlerFactoryInterface", "MetaData": { "Keys": [ "wbmp" ], "MimeTypes": [ "image/vnd.wap.wbmp" ] }, "archlevel": 1, "className": "QWbmpPlugin", "debug": false, "version": 395008 }

qt.core.plugin.factoryloader: Got keys from plugin meta data QList("wbmp") qt.core.plugin.factoryloader: looking at "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/imageformats/libqpdf.so" qt.core.plugin.loader: Found metadata in lib /media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/imageformats/libqpdf.so, metadata= { "IID": "org.qt-project.Qt.QImageIOHandlerFactoryInterface", "MetaData": { "Keys": [ "pdf" ], "MimeTypes": [ "application/pdf" ] }, "archlevel": 1, "className": "QPdfPlugin", "debug": false, "version": 395008 }

qt.core.plugin.factoryloader: Got keys from plugin meta data QList("pdf") qt.core.plugin.factoryloader: looking at "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/imageformats/libqtga.so" qt.core.plugin.loader: Found metadata in lib /media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/imageformats/libqtga.so, metadata= { "IID": "org.qt-project.Qt.QImageIOHandlerFactoryInterface", "MetaData": { "Keys": [ "tga" ], "MimeTypes": [ "image/x-tga" ] }, "archlevel": 1, "className": "QTgaPlugin", "debug": false, "version": 395008 }

qt.core.plugin.factoryloader: Got keys from plugin meta data QList("tga") qt.core.plugin.factoryloader: looking at "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/imageformats/libqicns.so" qt.core.plugin.loader: Found metadata in lib /media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/imageformats/libqicns.so, metadata= { "IID": "org.qt-project.Qt.QImageIOHandlerFactoryInterface", "MetaData": { "Keys": [ "icns" ], "MimeTypes": [ "image/x-icns" ] }, "archlevel": 1, "className": "QICNSPlugin", "debug": false, "version": 395008 }

qt.core.plugin.factoryloader: Got keys from plugin meta data QList("icns") qt.core.plugin.factoryloader: looking at "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/imageformats/libqgif.so" qt.core.plugin.loader: Found metadata in lib /media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/imageformats/libqgif.so, metadata= { "IID": "org.qt-project.Qt.QImageIOHandlerFactoryInterface", "MetaData": { "Keys": [ "gif" ], "MimeTypes": [ "image/gif" ] }, "archlevel": 1, "className": "QGifPlugin", "debug": false, "version": 395008 }

qt.core.plugin.factoryloader: Got keys from plugin meta data QList("gif") qt.core.plugin.factoryloader: looking at "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/imageformats/libqico.so" qt.core.plugin.loader: Found metadata in lib /media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/imageformats/libqico.so, metadata= { "IID": "org.qt-project.Qt.QImageIOHandlerFactoryInterface", "MetaData": { "Keys": [ "ico", "cur" ], "MimeTypes": [ "image/vnd.microsoft.icon", "image/vnd.microsoft.icon" ] }, "archlevel": 1, "className": "QICOPlugin", "debug": false, "version": 395008 }

qt.core.plugin.factoryloader: Got keys from plugin meta data QList("ico", "cur") qt.core.plugin.factoryloader: looking at "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/imageformats/libqjpeg.so" qt.core.plugin.loader: Found metadata in lib /media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/imageformats/libqjpeg.so, metadata= { "IID": "org.qt-project.Qt.QImageIOHandlerFactoryInterface", "MetaData": { "Keys": [ "jpg", "jpeg" ], "MimeTypes": [ "image/jpeg", "image/jpeg" ] }, "archlevel": 1, "className": "QJpegPlugin", "debug": false, "version": 395008 }

qt.core.plugin.factoryloader: Got keys from plugin meta data QList("jpg", "jpeg") qt.core.plugin.factoryloader: checking directory path "/media/Data/spx/miniconda3/envs/cellpose/bin/imageformats" ... qt.core.library: "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/imageformats/libqsvg.so" loaded library qt.core.library: "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/imageformats/libqtiff.so" loaded library qt.core.library: "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/imageformats/libqwebp.so" loaded library qt.core.library: "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/imageformats/libqwbmp.so" loaded library qt.core.library: "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/imageformats/libqpdf.so" loaded library qt.core.library: "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/imageformats/libqtga.so" loaded library qt.core.library: "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/imageformats/libqicns.so" loaded library qt.core.library: "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/imageformats/libqgif.so" loaded library qt.core.library: "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/imageformats/libqico.so" loaded library qt.core.library: "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/imageformats/libqjpeg.so" loaded library qt.core.plugin.factoryloader: checking directory path "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/accessiblebridge" ... qt.core.plugin.factoryloader: checking directory path "/media/Data/spx/miniconda3/envs/cellpose/bin/accessiblebridge" ... qt.core.plugin.factoryloader: checking directory path "/media/Data/spx/miniconda3/envs/cellpose/lib/python3.8/site-packages/PyQt6/Qt6/plugins/accessible" ... qt.core.plugin.factoryloader: checking directory path "/media/Data/spx/miniconda3/envs/cellpose/bin/accessible" ... 2024-09-19 15:14:26,452 [INFO] TORCH CUDA version installed and working. This plugin does not support propagateSizeHints()

carsen-stringer commented 1 week ago

the gui is not opening with this error? and this is running locally not on a server? can you please try a newer python version and also potentially torch version? 1.11 is pretty old

this is a pyqt error, so you can also try pip uninstall pyqt5 and then conda install pyqt, I haven't seen this error before