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MouseLand / cellpose

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
https://www.cellpose.org/
BSD 3-Clause "New" or "Revised" License
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[BUG] Google Collab notebook - no attribute 'train' #872

Closed superwormz closed 4 months ago

superwormz commented 4 months ago

Hi Carsen,

Sorry, I feel like I'm bombarding you with bugs!

When using the colab notebook this error is produced when training:

'CellposeModel' object has no attribute 'train'

My assumption, based on your comment of "we will update the documentation soon. the train function is no longer a method of the CellposeModel class, it's now a standalone function in train.py called train_seg" in another post is that some code in the notebook isnt up to date with the new V3. To get around this I have used "pip install cellpose==2.2.3" to revert to an earlier version and it now works.

Thanks for all your work on this. Best of luck with the bug squishing!

carsen-stringer commented 4 months ago

thanks your feedback is very helpful! I will update the google colab notebooks today, but in the meantime, yes please use a cellpose 2 release

carsen-stringer commented 4 months ago

this is updated now to work with v3